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SBM authorizes you to access and browse the data herein for academic and non-profit use only. You can access to the data only if you agree that any copy of information that you produce by using these data sets are allowed only for the personal and educational purposes of individuals and organizations in their work provided proper citation is given.

In addition, note that the annotation is provided as-is without warranty of any kind. Although the gene expression has been annotated by multiple experts, it is undeniable that such evaluation entails subjectivity to a certain extent.

Annotation of Gene Expression Patterns

EMBRYS_expression_annotation_091215.xls (MS-Excel)623kb]


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GeneIDSymbolAlternative
14797AesGrg; Grg5
11695Alx4lst
107765Ankrd1Alrp; CARP; Crap
107351Ankrd15AU015049; AW121052; MGC90826; mKIAA0172; A930031B09Rik; D330024H06Rik
13496Arid3aDri1; Bright
11908Atf1-
11921Atoh1Hath1; Math1; MATH-1
12013Bach1-
54422Barhl1MBH2; Dres115
12022Barx1-
12227Btg2Pc3; TIS21; AA959598
59035Carm1PRMT4; MGC46828
12395Cbfa2t1hETO; MTG8
12567Cdk4Crk3
12591Cdx2Cdx-2
12606CebpaCebp; CBF-A
12705Cited1Msg1; AI316840; AU019144
12785Cnbp1Cnbp; AA408710
12913Creb3Luman; C80076; LZIP-1; LZIP-2; AU044960; AW538053
56449CsdaYb2; Dpba; MSY4; Ybx3; dbpA; oxyR
13017Ctbp2Ribeye; D7Ertd45e
13392Dlx2Dlx-2; Tes-1; AW121999
13393Dlx3Dlx-3; AV237891
13394Dlx4Dlx7; Dlx-4; MGC129167
13395Dlx5AI385752
226049Dmrt2Terra
71241Dmrtc2Dmrt7; 4933432E21Rik
243187E130309B19RikMGC90874
13591Ebf1Ebf; Olf1; O/E-1; Olf-1; AW990631; 9830166E18Rik
13653Egr1egr; TIS8; Zenk; Egr-1; NGFIA; Zfp-6; ETR103; Krox-1; Krox24; NGF1-A; NGFI-A; Zif268; Krox-24; A530045N19Rik
15569Elavl2Hub; mel-N1
192657Ell2-
13797Emx2Pdo
13798En1En-1; Mo-en.1
13799En2En-2; BB131122
13813EomesTbr2; C77258
13819Epas1HLF; MOP2; HIF-2alpha
104156Etv5ERM; 1110005E01Rik; 8430401F14Rik
14029Evx2Evx-2
14049Eya2AI327163
14200Fhl2-
14247Fli1Sic1; EWSR2; Fli-1; SIC-1
64290Foxb1C43; Mf3; Twh; Fkh5; Foxb1a; Foxb1b; Hfh-e5.1
14234Foxc2Mfh1; Fkh14; MFH-1; Hfhbf3
15229Foxd1BF-2; Hfh10; FREAC4; Hfhbf2; AI385632
74123Foxp4mFKHLA; 1200010K03Rik; 2310007G05Rik
233908FusTls; Fus1; D430004D17Rik; D930039C12Rik
14105Fusip1Nssr; TASR; NSSR1; NSSR2; TASR1; TASR2; FUSIP2; SRrp40
14460Gata1Gf-1; Gata-1
14461Gata2Gata-2; MGC129339
14465Gata6-
14472Gbx2Gbx-2; MMoxA; Stra7; D130058E05Rik
14632Gli1Zfp5; Zfp-5; AV235269
14633Gli2AW546128
14634Gli3Xt; Bph; Pdn; add; AI854843; AU023367
14836Gsc-
15110Hand1-
15111Hand2Hed; Th2; dHAND; Ehand2; Thing2
15205Hes1Hry
15207Hes3HES-3
15208Hes5-
15213Hey1HRT1; Herp2; hesr-1; AI316788; AI414254
56198HeylHrt3; hesr3
208715Hmgcs1MGC36662; B130032C06Rik
15384HnrpabCBF-A; Cgbfa; 3010025C11Rik
15395Hoxa10Hox-1.8; Hoxa-10
15396Hoxa11Hox-1.9; Hoxa-11
15398Hoxa13Hd; Hox-1.10; MGC124020; MGC124021; MGC124022
15404Hoxa7Hox-1.1; AV118143
15405Hoxa9D6a9; Hox-1.7
15407Hoxb1Hox-2.9; MGC124123
15408Hoxb13-
15413Hoxb5Hox-2.1; AI385717
209448Hoxc10Hox-3.6; AI506621
15424Hoxc5Hox-3.4; Hox-6.2; AI181837
15425Hoxc6Hox-3.3; Hox-6.1
15430Hoxd10Hox-4.5; Hox-5.3; AI385591; AI874987
15432Hoxd12Hox-4.7; Hox-5.6
15434Hoxd3Hox-4.1; Hox-5.5
15436Hoxd4Hox-4.2; Hox-5.1; 6030436D05Rik
15438Hoxd9Hox-4.4; Hox-5.2
15516Hspcb90kDa; Hsp84; Hsp90; C81438; Hsp84-1; AL022974; MGC115780
15903Idb3Idb3; HLH462
71777Ing3P47ING3; 1300013A07Rik
16371Irx1-
16372Irx2IRX6; MGC103290
16373Irx3AI894186
54352Irx5-
16392Isl1-
104360Isl23110001N10Rik
16468Jarid2Jmj; C79929; C79931; AI317256; AU045941
230674Jmjd2aJmjd2; MGC28562; mKIAA0677; D4Ertd222e
20218Khdrbs1p62; Sam68
23849Klf6FM2; FM6; Zf9; BCD1; CPBP; Copeb; C86813; R75280; Ierepo1; Ierepo3; AI448727
207667Lbxcor1Corl1; AV273001; 4931440A04; C230094B15Rik
16842Lef1Lef-1; AI451430; 3000002B05
16869Lhx1Lim1
16870Lhx2ap; LH2A; Lh-2; Lim2; apterous
16875Lhx8L3; Lhx7
16909Lmo2Ttg2; Rbtn2; Rbtn-2; Rhom-2
16911Lmo4Crp3; Etohi4; A730077C12Rik
110648Lmx1adr; sst; Lmx1.1; dreher; MGC129356; MGC129357
16917Lmx1bLMX1.1; LMX1.2
17191Mbd2MBD2a
17216Mcm2BM28; CDCL1; Mcmd2; AA959861; AW476101; mKIAA0030
17268Meis1Evi8; C530044H18Rik
17285Meox1Mox1; Mox-1; AI385561; D330041M02Rik
17286Meox2Gax; Mox2; Mox-2; AI528662
70122Mllt3Af9; D4Ertd321e; 2210011H10Rik; 2610012I03Rik; 3830408D16Rik
17536Mrg1Meis2; Stra10; A430109D20Rik
17701Msx1msh; Hox7; Hox-7; Hox7.1; AA675338; AI324650
17702Msx2Hox8; Hox-8; Hox8.1; BB122635
18109MycnNmyc; N-myc; Nmyc1; Nmyc-1; c-nmyc
17877Myf5B130010J22Rik
17928Myogmyo; MYF4
20602Ncor2SMRT; N-CoR; SMRTe
17984NdnPeg6; AI528698
66647Ndnl2HCA4; Mageg1; mage-g1; AI642138; BB044375; 5730494G16Rik
73181Nfatc4Nfat3; AW107667; AW546455; 3110041H08Rik
18027NfiaNF1-A; 1110047K16Rik; 9430022M17Rik
18030Nfil3E4BP4; AV225605
18072Nhlh2Hen2; NSCL2; Nscl-2; 6230401I09Rik
110109Nol1-
20186Nr1h4Fxr; HRR1; RIP14; Rxrip14; AI957360
11819Nr2f2ARP-1; SVP40; Aporp1; COUPTFB; COUP-TF2; Tcfcoup2; COUP-TFII; 2700033K02Rik; 9430015G03Rik
67122Nrarp2700054M22Rik
15379Onecut1Oc1; Hnf6; Hfh12; D9Ertd423e
107587Osr25430409I15Rik
18424Otx2E130306E05Rik
18503Pax1un; wt; hbs; Pax-1; hunchback; undulated
18505Pax3Sp; Pax-3; splotch
18508Pax6Dey; Sey; AEY11; Pax-6; Gsfaey11; 1500038E17Rik
18511Pax9Pax-9
18515Pbx2G17; AU043397
54132Pdlim1Clim1
30794Pdlim4Ril
18616Peg3Pw1; End4; Gcap4; Zfp102; mKIAA0287
268448Phf12PF1; mKIAA1523; F630045O13; 2410142K10Rik
271305Phf21bA730032D07Rik
68479Phf5a1110007B08Rik
18740Pitx1Bft; Potx; Ptx1; P-OTX
18742Pitx3ak; Ptx3
208076Pknox2Prep2; D230005H23Rik
108767Pnrc1B4-2; PRR2; Prol2; 5730463C12Rik; E430001P21
66420Polr2eRPB5; XAP4; 25kDa; AW208866; 2410021N14Rik
18987Pou2f2Otf2; Oct-2; Oct2a; Oct2b; Otf-2; MGC124154; MGC124155; MGC124156
18991Pou3f1Otf6; Scip; Tst1; Oct-6; Test1; Tst-1
18994Pou3f4Slf; Brn4; Otf9; Brn-4
18997Pou4f2Brn3b; Brn-3b; Brn-3.2
12142Prdm1Blimp1; Blimp-1; PRDI-BF1; ZNFPR1A1
19130Prox1A230003G05Rik
18933Prrx1K-2; Pmx1; Prx1; mHox; AA755424; AI385634; AI843499; A230024N07Rik
58184Rqcd1Fl10; AI593551; 2610007F23Rik
12394Runx1AML1; Cbfa2; Pebp2a2; Pebpa2b; AI462102
12393Runx2Cbf; LS3; AML3; Osf2; Cbfa1; Cbfa-1; PEBP2aA; Pebp2a1; Pebpa2a
56505Ruvbl1Tip49a; Pontin52; 2510009G06Rik
20174Ruvbl2p47; mp47
20689Sall3Sal; Msal; Salt; Spalt; Msal-1; B130022O04Rik
99377Sall4Tex20; C78083; C78563; AA407717; AL022809; AW536104; 5730441M18Rik; C330011P20Rik
20289ScxScl
110796Sdccag33Mtsh1; KIAA4206; NY-CO-33; mKIAA4206; D18Bwg1409e; 5730407I04Rik
20471Six1BB138287
20586Smarca4Brg1, SW1/SNF, HP1-BP72, SNF2embrys
57376Smarce1Baf27; 2810417B20Rik; 9030408N19Rik
12180Smyd1Bop; C78565; Zmynd18; 4632404M21Rik
76793Snip12410133M08Rik
20682Sox9AV220920; KIAA4243; mKIAA4243; 2010306G03Rik
83395Sp6Epfn; Klf14; AA591031; AI592962; 1110025J03Rik
320145Sp8mBtd; MGC105193; D930049B17Rik
30051SpdefPse; PDEF
20728SpicPrf; Spi-C; C76795; AU019198
20901StrapC78091; C79202; AW557906
270627Taf1Ccg1; Ccg-1; Taf2a; 250kDa; AU015687; TAFII250; B430306D02Rik
21384Tbx15de; Tbx8; Tbx14
76365Tbx182810012F10Rik; 2810404D13Rik
21385Tbx2-
21386Tbx3D5Ertd189e
21414Tcf7Tcf1; TCF-1; AI465550
21416Tcf7l2Tcf4; TCF4B; TCF4E; Tcf-4; mTcf-4B; mTcf-4E
21677Tead2ETF; Etdf; TEF4; TEF-4; TEAD-2
21681Thoc4ALY; REF1; Refbp1
22061Trp63Ket; p63; Tp63; p73L; TAp63; p51/p63; AI462811; Trp53rp1; MGC115972
21807Tsc22d1TSC; Egr5; TSC-22; Tgfb1i4; AA589566; AW105905
97064Wwtr1TAZ; 2310058J06Rik; 2610021I22Rik
22608Ybx1EF1A; MSY1; YB-1; dbpB; Nsep1; C79409; mYB-1a; MGC118070; 1700102N10Rik
69890Zfp2192010302A17Rik
30928Zfp238RP58
29813Zfp385Hzf
669351700023B02RikCir, Cicr, CBF1ic, 2010015A19; 2810021A19Rik
2370294932411N23Rik-
744344933406N12RikAI413378

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